ideal_genom_qc.Helpers

ideal_genom_qc.Helpers.arg_parser() → dict

ideal_genom_qc.Helpers.delete_temp_files(files_to_keep: list, path_to_folder: str) → None

Function to delete temporary files that were created during the pipeline execution. Moreover, it creates a directory called ‘log_files’ to save al .log files originated from the pipeline execution.

Parameters:

• files_to_keep (list) – list of strings where its elements are the names of files and folders that should be kept.

• path_to_folder (str) – full path to the folder where the temporary files are located.

ideal_genom_qc.Helpers.shell_do(command, print_cmd=False, log=False, return_log=False, err=False)

From GenoTools